| Embracing Love | March 31, 2005 | — | 2 |
| Emma – A Victorian Romance | April 2, 2005 | — | 24 |
| Encouragement of Climb | January 3, 2013 | — | 49 |
| Endo and Kobayashi Live! The Latest on Tsundere Villainess Lieselotte | January 7, 2023 | — | 12 |
| Endride | April 3, 2016 | — | 24 |
| Endro! | January 12, 2019 | — | 12 |
| Engage Kiss | July 2, 2022 | — | 13 |
| Engage Planet Kiss Dum | April 3, 2007 | — | 26 |
| Engaged to the Unidentified | January 8, 2014 | — | 12 |
| Ensemble Stars! | July 7, 2019 | — | 24 |
| Erased | January 8, 2016 | — | 12 |
| Eren the Southpaw | April 8, 2026 | — | 13 |
| Ergo Proxy | February 25, 2006 | WOWOW, Fuse | 23 |
| Erin | January 10, 2009 | NHK General TV | 50 |
| Eromanga Sensei | April 9, 2017 | — | 12 |
| Estab-Life: Great Escape | April 7, 2022 | Fuji Television | 12 |
| Eternal Boys | October 11, 2022 | — | 24 |
| Etotama | April 9, 2015 | — | 12 |
| Eureka Seven | April 17, 2005 | TBS Television | 50 |
| Eureka Seven: AO | April 12, 2012 | — | — |
| Eureka Seven: Hi-Evolution | — | — | — |
| Even a Replica Can Fall in Love | April 7, 2026 | — | 13 |
| Even Given the Worthless "Appraiser" Class, I'm Actually the Strongest | January 9, 2025 | — | 12 |
| Even the Student Council Has Its Holes! | October 4, 2026 | — | — |
| Even Though I'm a Super Timid Noble Girl, I Accepted the Bet From My Cunning Fiancé | October 4, 2026 | — | — |
| Everyday Host | April 5, 2025 | — | — |
| Everyone's Darling Has a Secret | April 2027 | — | — |
| Everything for Demon King Evelogia | October 1, 2021 | — | 9 |
| Evil or Live | October 10, 2017 | — | — |
| Ex-Arm | January 11, 2021 | — | 12 |
| Excel Saga | October 8, 1999 | TV Tokyo | 26 |
| Explorer Woman Ray | May 26, 1989 | — | 2 |
| Extreme Hearts | July 10, 2022 | — | 12 |
| Eyeshield 21 | April 6, 2005 | TV Tokyo | 145 |
| F | March 9, 1988 | Fuji Television | 31 |
| F-Zero: GP Legend | October 7, 2003 | TX Network | — |
| F3 | — | — | — |
| Fables of the Green Forest | January 7, 1973 | — | 52 |
| Fabre-sensei wa Meitantei | April 11, 2000 | NHK Satellite 2 Television | 26 |
| Fafner in the Azure | July 4, 2004 | — | 26 |
| Failure Frame | July 5, 2024 | — | 12 |
| Fairy Gone | April 7, 2019 | — | 24 |
| Fairy Ranmaru | April 8, 2021 | — | 12 |
| Fairy Tail | October 12, 2009 | TV Tokyo | 328 |
| Fairy Tail: 100 Years Quest | July 7, 2024 | — | — |
| Fall in Love, You False Angels | 2027 | — | — |
| Famous Dog Lassie | January 14, 1996 | — | 26 |
| Fancy Lala | April 5, 1998 | — | 26 |
| Fanfare of Adolescence | April 2, 2022 | — | 13 |
| Fang of the Sun Dougram | October 23, 1981 | — | 75 |
| Fantasista Doll | July 7, 2013 | — | 12 |
| Fantastic Children | October 4, 2004 | — | 26 |
| Fantastic Detective Labyrinth | October 2, 2007 | TV Tokyo | 25 |
| Fantasy Adventure: Nagagutsu o Haita Neko no Bōken | April 1, 1992 | — | 26 |
| Farewell, My Dear Cramer | April 4, 2021 | — | 13 |
| Farmagia | January 10, 2025 | — | 12 |
| Farming Life in Another World | January 6, 2023 | — | 12 |
| Fate Rewinder | April 2027 | — | — |
| Fate/Apocrypha | July 2, 2017 | — | 25 |
| Fate/Extra Last Encore | January 28, 2018 | — | — |